3D visualization tools

  • Avogadro: advanced molecule editor and visualizer designed for cross-platform use (draw molecules...) (standalone)

    Publication JIF

  • BlendMol: Advanced Macromolecular Visualization in Blender (standalone)

    Publication JIF

  • Chimera: (standalone)

    Publication JIF

  • ChimeraX: molecular graphics (standalone)

    Publication JIF

  • Datagrok: NGL viewer integrated in Datagrok

  • MichelaNGLO: An interactive protein on your website with a few clicks (standalone)

  • MolView: draw and viewer in 2D or 3D of small molecules and proteins (online)

    Publication

  • MolViewSpec: Toolkit and Mol* Extension for Describing Molecular Visualizations

    Publication

  • Nglviewer: view molecular 3D structures (online)

    Publication

  • Open-source PyMol: molecular graphics (standalone)
    Code Last Commit

  • OpenStructure: look at molecular structures (standalone)

    Publication

  • Protein Imager: 3D molecular structure display (online)

    Publication JIF

  • PyMol: molecular graphics (standalone)

  • PyMolshortcuts: Shortcuts For Faster Image Creation in PyMOL - Scripts (standalone)
    Code Last Commit

    Publication JIF

  • Pymol-script-repo: PyMol python scripts (standalone)
    Code Last Commit

  • QuteMol: (standalone)

  • SAMSON: software for adaptative modeling and simulation (nano), GROMACS can be launched from SAMSON... (standalone)

  • VMD: molecular visualization program (standalone)

    Publication

  • VTX: High performance molecular visualization software (Windows, Linux) (standalone)
    Code

  • Web3DMol: view protein in 3D and sequences (online)

    Publication JIF

  • YASARA: molecular-graphics, -modeling and -simulation program (standalone)

    Publication