High dimensional data + Dimensionality reduction
- Chemical Space dataviz: Visualizing chemical space networks with RDKit and NetworkX (standalone)
- ChemTreeMap:
- TMAP: A new data visualization method, TMAP, capable of representing data sets of up to millions of data points and arbitrary high dimensionality as a two-dimensional tree.
- t-SNE:
- ugtm: a python package for Generative Topographic Mapping (GTM) - dataviz - classification - regression (standalone)
:) - UMAP: Uniform Manifold Approximation and Projection