3D visualization tools

  • Avogadro: advanced molecule editor and visualizer designed for cross-platform use (draw molecules...) (standalone)
    Publication Link
  • BlendMol: Advanced Macromolecular Visualization in Blender (standalone)
    Publication Link
  • Chimera: (standalone)
    Publication Link
  • ChimeraX: molecular graphics (standalone)
    Publication Link
  • MichelaNGLO: An interactive protein on your website with a few clicks (standalone)
    Link
  • MolView: draw and viewer in 2D or 3D of small molecules and proteins (online)
    Publication Link
  • MolViewSpec: Toolkit and Mol* Extension for Describing Molecular Visualizations
    Publication Link
  • Nglviewer: view molecular 3D structures (online)
    Publication Link
  • OpenStructure: look at molecular structures (standalone)
    Publication Link
  • Protein Imager: 3D molecular structure display (online)
    Publication Link
  • PyMol: molecular graphics (standalone)
    Link
  • Pymol-script-repo: PyMol python scripts (standalone)
    Code Last Commit
  • PyMolshortcuts: Shortcuts For Faster Image Creation in PyMOL - Scripts (standalone)
    Code Last Commit Publication
  • QuteMol: (standalone)
    Link
  • SAMSON: software for adaptative modeling and simulation (nano), GROMACS can be launched from SAMSON... (standalone)
    Link
  • VMD: molecular visualization program (standalone)
    Publication Link
  • VTX: High performance molecular visualization software (Windows, Linux) (standalone)
    Code
  • Web3DMol: view protein in 3D and sequences (online)
    Publication Link
  • YASARA: molecular-graphics, -modeling and -simulation program (standalone)
    Publication Link