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Structure Refinement

  • AIR: Artificial Intelligence-Based Multi-Objective Optimization Protocol for Protein Structure Refinement (standalone)

    Publication

  • DeepRefiner: high-accuracy protein structure refinement by deep network calibration (online)

    Publication JIF

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  • DeepTracer-refine:

  • FASPR: An Open-Source Tool for Fast and Accurate Protein Side-Chain Packing (standalone on github and online)
    Code Last Commit

    Publication JIF

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  • FG-MD: molecular dynamics (MD) based algorithm for atomic-level protein structure refinement (online)

    Publication JIF

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  • ModRefiner: atomic-level, high-resolution protein structure refinement (online)

    Publication JIF

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AlphaFold2

  • PICNIC: refinement of AlphaFold2 tertiary structure predictions using deep 3D residual neural networks
    Code Last Commit

    Publication JIF