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Databases

Data Mining

  • Lemon: a framework for rapidly mining structural information from the Protein Data Bank (standalone)
    Code Last Commit Publication
  • PDBminer: PDBminer to Find and Annotate Protein Structures for Computational Analysis
    Code Last Commit Publication

Databases

  • EMDB: Electron Microscopy Data Bank
    Publication Webserver
  • PDB: The RCSB Protein Data Bank provides access to experimentally determined 3D structures from the PDB archive and computed structure models, offering tools for exploration, visualization, and analysis.
    Publication Webserver
  • PDBe: PDBe: improved findability of macromolecular structure data in the PDB
    Publication Webserver
  • PDB-redo: Offers optimized versions of PDB entries through an automated procedure that refines, rebuilds, and validates structural models, combining popular crystallographic software with specially developed tools.
    Publication Webserver