PyMol

• DockingPie: DockingPie is a PyMOL plugin that offers a graphical interface for molecular and consensus docking analyses, integrating docking programs like Smina, Autodock Vina, RxDock, and ADFR.
  
  
  
• iPBAVizu:
  
  
• ProBis H2O plugin: ProBis H2O is a plugin for PyMOL that identifies conserved water sites in protein structures for drug design, supporting PyMOL version 2.3 and above on Linux and Windows.
  
  
• ProBis H2O-MD plugin:
  
  
• ProBis plugin: The ProBis plugin for PyMOL and UCSF Chimera enables users to detect protein binding sites, developed to work on Linux and tested in Windows environments, supporting PyMOL version 1.7.0.0 and UCSF Chimera version 1.11.
  
  

AI

• ChatMol: An Agent for Molecular Modeling and Computation Powered by LLMs
  
  
  

Docking

• NRGSuite: