CADD Vault
Tutorials
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CADD Vault
GitHub
Computer-Aided Drug Design (CADD) Vault
Contributing to the CADD Vault
ADMET
ADMET
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Binding Affinity Prediction
Binding Affinity Prediction
Reviews
Chemical Space
Chemical Space
Chemical Space Search
Chemical library generation
Diversity Determination
Reviews
Visualisation
Clustering
Clustering
Clustering
Combinatorial Chemistry
Combinatorial Chemistry
Combinatorial Chemistry
Compound Library Handling
Compound Library Handling
Data splitting
Database Management
Library Filtering
Molecule Preparation
Conformer Generation
Conformer Generation
Classical
ML+AI
Reviews
Crystallography
Crystallography
Crystallography
Data Management
Data Management
Comp Chem Data Management
Dataset Mining
Dataset Mining
Chemical
Protein Structures
Datasets
Datasets
ADMET
Chemical Reactions
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Docking and Scoring Function Benchmarks
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Drugs
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Molecular Dynamics
Natural Products
PROTACs
Properties
Protein Sequences
Protein Structures
Protein Targets
Protein Ligand Interaction
Quantum Chemistry
Toxicity
Virtual Libraries
De Novo Generation
De Novo Generation
Benchmarking
Bioisostere
De Novo Generation
Linker Generation
Molecular Optimisation
Protein Pocket Generation
Reviews
Target Aware De Novo Generation
Tools
Decoy Generation
Decoy Generation
Decoy Generation
FBDD
FBDD
FBDD
General Tools
General Tools
Chemical Format Translation
Cheminformatics
Fingerprints
Reviews
HTS Analysis
HTS Analysis
HTS Analysis
Ligand based Virtual Screening
Ligand based Virtual Screening
Ligand based Virtual Screening
ML+AI
ML+AI
Active Learning
Automatic Model Selection
Courses
Few shot learning
Foundational Models
Important Papers
ML Models
ML+AI frameworks for chemistry
Reviews
Molecular Dynamics
Molecular Dynamics
Automated Workflows
Coarse Grained
Forcefields
Free Energy Calculations
Generation of biomolecular environment
Implicit Solvation
Libraries
Ligand topology generation
ML Potentials
MMGBSA + MMPBSA
Metadynamics
Molecular Dynamics Engines
Residence Time
Tutorials
Molecule Representations
Molecule Representations
Binary
Descriptors
Fingerprints
Hybrid
ML+AI
Other Representations
Strings
Vector
Wrappers for several representations
Optical Structure Recognition
Optical Structure Recognition
Optical Structure Recognition
Other
Other
Other
Pharmacophore
Pharmacophore
Pharmacophore
Plugins
Plugins
Chimera
PyMol
Property Prediction
Property Prediction
ML+AI
Pre trained Models
QSAR|QSPR
Representation Learning
Protein Structure
Protein Structure
Allosteric Interactions
Binding Site Prediction
Binding Site Similarity
Conformational Ensemble Generation
Databases
Homology Modelling
Loop Modelling
ML Structure Prediction
Other
Protein Protein Docking
Protein Protein Interactions
Protonation
Sequence Alignment
Structure Manipulation Librairies
Structure Quality Assessment
Structure Refinement
Water Prediction
QM
QM
General Tools
Reaction Tools
Reviews
Resources
Resources
Blogs
Books
Courses
Other Resources
Reviews
Structure based Virtual Screening
Structure based Virtual Screening
Docking Pose Processing
Docking Score Prediction
Docking
Ensemble Docking
ML+AI
Performance Metrics
Scoring Functions
Synthesis
Synthesis
Reaction Optimization
Retrosynthesis Prediction
Synthesisable Analog Generation
Synthetic Accessibility Score
Target Identification
Target Identification
Reviews
Target identification
VS Workflows
VS Workflows
Database
Fragment based
Full Workflows
Guides
Workflow Calibration + Optimisation
Visualisation Tools
Visualisation Tools
3D visualization tools
Binding + Docking Poses
Biology + Medicine
Chemistry
Drug Screening Data
General Plotting
High dimensional data + Dimensionality reduction
Interactive Plots
MD Simulations
Other
Protein Sequences
SDF files
Virtual Screening
Workflow schedulers
Workflow schedulers
Workflow schedulers
Tutorials
GROMACS Tutorial
: Introductory Tutorials for Simulating Protein Dynamics with GROMACS
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