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Coarse Grained

  • ENCoM:
    Code
    Last Commit
    Publication
  • AWSEM-MD: a coarse-grained protein simulation package (Associative Memory, Water Mediated, Structure and Energy Model) which is implemented as a package for the LAMMPS tool
    Publication
    Link
  • CGMD Platform: Integrated Web Servers for the Preparation, Running, and Analysis of Coarse-Grained Molecular Dynamics Simulations (online)
    Publication
    Webserver
  • MERMAID: web server to prepare and run coarse-grained membrane protein dynamics (online)
    Webserver

Force Fields

  • SIRAH: Coarse-Grained forcefield for Gromacs and Amber (standalone)
    Link