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Coarse Grained

  • AWSEM-MD: a coarse-grained protein simulation package (Associative Memory, Water Mediated, Structure and Energy Model) which is implemented as a package for the LAMMPS tool
    Publication Link
  • CGMD Platform: Integrated Web Servers for the Preparation, Running, and Analysis of Coarse-Grained Molecular Dynamics Simulations (online)
    Publication Webserver
  • ENCoM: ENCoM server: exploring protein conformational space and the effect of mutations on protein function and stability
    Code Last Commit Publication
  • MERMAID: web server to prepare and run coarse-grained membrane protein dynamics (online)
    Webserver

Force Fields

  • SIRAH: Coarse-Grained forcefield for Gromacs and Amber (standalone)
    Link