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Coarse Grained

  • AWSEM-MD: a coarse-grained protein simulation package (Associative Memory, Water Mediated, Structure and Energy Model) which is implemented as a package for the LAMMPS tool

    Publication JIF

  • CGMD Platform: Integrated Web Servers for the Preparation, Running, and Analysis of Coarse-Grained Molecular Dynamics Simulations (online)

    Publication JIF

    Webserver

  • ENCoM:
    Code Last Commit

    Publication

  • MERMAID: web server to prepare and run coarse-grained membrane protein dynamics (online)

    Webserver

Forcefields

  • SIRAH: Coarse-Grained forcefield for Gromacs and Amber (standalone)